PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.1276s0003.5.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

G2-like

Protein Properties

Length: 473aa MW: 51320.6 Da PI: 5.9434

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.1276s0003.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.1	1.7e-32	255	309	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fv+av++LGGse+AtPk +l+ m+++gLt++hvkSHLQkYR+ Kalax.1276s0003.5.p 255 KARMRWTPELHEAFVQAVASLGGSERATPKGVLKRMNIEGLTIYHVKSHLQKYRT 309 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.433	252	312	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.8E-29	255	310	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.3E-16	255	309	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-23	255	309	IPR006447	Myb domain, plants
Pfam	PF00249	4.7E-10	257	308	IPR001005	SANT/Myb domain
Pfam	PF14379	3.4E-25	342	388	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MEARPIPIYN SGGKQHSGAC GAISSSLSVL PSHLDHNSPN FQDHQQASLR KGVMGGGSFM 60 RASPFISNNG MVGPLHSSSS GFSTDIQFSN VSPCSRNTST ISQSSINVTP FPPTHSSFSG 120 VLQSTASSQI NSANNISWCT DPQQEFFDFA SPGNHIQTGR KGSSAVMPTD DLGKQSDWQE 180 WADQLITSEE ALNANWNEYI CDVALENMDG ETGCIKKPSS DVQRQQPQVQ LQPTAPSSET 240 GNAGTPTSSA NGAVKARMRW TPELHEAFVQ AVASLGGSER ATPKGVLKRM NIEGLTIYHV 300 KSHLQKYRTA RFRPDPSEAG SSDKRSTSIE EISSLDLKSG IDITEALRLQ MEVQKRLHEQ 360 LEVQRNLQLR IEEQGRYLQQ MFEQQCKSMP DSVKAAMTPD GQQHSSDKLG VQEVSPNDNK 420 NPGSENADSS TSLGENPCNQ VILPAKSSRE VDDIDMSQPS KRKKTGEPSE PN*

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MEARPIPIYN SGGKQHSGAC GAISSSLSVL PSHLDHNSPN FQDHQQASLR KGVMGGGSFM  60
RASPFISNNG MVGPLHSSSS GFSTDIQFSN VSPCSRNTST ISQSSINVTP FPPTHSSFSG  120
VLQSTASSQI NSANNISWCT DPQQEFFDFA SPGNHIQTGR KGSSAVMPTD DLGKQSDWQE  180
WADQLITSEE ALNANWNEYI CDVALENMDG ETGCIKKPSS DVQRQQPQVQ LQPTAPSSET  240
GNAGTPTSSA NGAVKARMRW TPELHEAFVQ AVASLGGSER ATPKGVLKRM NIEGLTIYHV  300
KSHLQKYRTA RFRPDPSEAG SSDKRSTSIE EISSLDLKSG IDITEALRLQ MEVQKRLHEQ  360
LEVQRNLQLR IEEQGRYLQQ MFEQQCKSMP DSVKAAMTPD GQQHSSDKLG VQEVSPNDNK  420
NPGSENADSS TSLGENPCNQ VILPAKSSRE VDDIDMSQPS KRKKTGEPSE PN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002270511.1	1e-141	PREDICTED: protein PHR1-LIKE 1
Swissprot	Q8GUN5	1e-80	PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBL	F6HZP9	1e-141	F6HZP9_VITVI; Putative uncharacterized protein
STRING	VIT_07s0005g04120.t01	1e-141	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28610.1	5e-89	phosphate starvation response 1

Link Out ? help Back to Top
Phytozome	Kalax.1276s0003.5.p